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Genomics and Genetics Weekly

Susan Hasty, Publisher

Table of Contents . . . December 31st, 2004

Non-Subscriber - Summaries Only

Related Areas: Other Issues in Genomics and Genetics Weekly | Other Publications

Cell Biology - DNA damage-induced centrosome amplification characterized

Cystic Fibrosis - Kinase-mediated biogenesis of conductance regulator revealed

Genomics and Genetics - Alternatively spliced sodium channel alpha-subunit gene expression determined

Tourette Syndrome - Gene expression in putamen of TS patients characterized

Vascular Disease - Study explored the mechanism by which homocysteine causes vascular disease

Acute Myeloid Leukemia - Real-time RT-PCR assay monitors DEK-CAN fusion transcripts in AML

Addiction Medicine - Isoelectric focusing of transferrin clarifies alcohol abuse markers

Adipogenesis - Notch pathway dispensable for adipocyte specification

Aging - Age-related RNA decline in adult Drosophila melanogaster revealed

Aging - Nicotine-induced fibroblast growth factor 2 mRNA is preserved during aging

Alcohol Toxicity - Work provides foundation for identifying genes in developmental alcohol toxicity

Alzheimer Disease -  Caenorhabditis elegans imp-2 essential for development, analysis reveals

Alzheimer Disease - Galanin receptor occupancy and Alzheimer disease analyzed

Analgesia - A novel mu-opioid receptor functions in morphine-induced analgesia

Angiology - Age-related increases in prostanoids may be behind weakened antioxidant capacity

Antibodies - Companies offer recombinant antibody for detection of cyclophilin A

Apoptosis - Cannabinoid dexanabinol inhibits NF-kappa B

Apoptosis - p53-dependent replication checkpoint is defective in cancer cells

Arthritis - Pharma company extends voucher program for Rheumatrex Dose Pack

Asthma - Immunostimulatory DNA reverses airway scarring, inflammation

Asthma - Pharma company files application for asthma medication, secures MS patents

Atherogenesis - Lovastatin and fenofibrate have anti-inflammatory effects

Atherosclerosis - Iroxanadine has potential for the treatment of cardiovascular disease

Atrioventricular Block - Permanent pacing was effective treatment for paroxysmal atrioventricular block

Awards - Swiss biopharmaceutical company research unit awarded entrepreneurial prize

Bacteroides Vaccine -  Bacteroides fragilis DNA inversions regulate cell surface adaptation

Behavior - Aggressors need dopamine, and victims require serotonin

Bioinformatics - Automated PHUNCTIONER assigns activity types to newly defined proteins

Biological Therapy - Therapeutic antibody gene transfer propels passive immunity

Blood Physiology - Effect of prothrombin G20210A mutation on protein C activation reported

Breast Cancer - Cystatin M is a novel candidate tumor suppressor gene for breast cancer

Breast Cancer - Microarray-based diagnostic test has reached level 3 in evidence-based medicine

Breast Cancer - Molecular test predicts recurrence risk and who will benefit from chemotherapy

Breast Cancer - New molecular classification predicts response to chemotherapy

Breast Cancer - Scientists find way to see breast cancer activity from outside the body

Breast Cancer - Selective loss of AKR1C1/2 may result in decreased progesterone catabolism

Breast Cancer - Stat3 upregulates MEK5 expression in breast tumor cells

Breast Cancer - Vacuum-assisted biopsy system, MRI-guided breast biopsy device unveiled

Breast Cancer - Validation study paves way for large-scale trial of personalized therapy

Business & Finance - Pharma company announces financial results

Business & Finance - Pharma company receives milestone payment from partner, Amgen Inc.

Business Update - Eyetech buys assets of oligonucleotide manufacturing facility

Business Update - Golden Hand Resources changes name

Business Update - Integrated Genomics licenses ERGO, genomic discovery system to Chr. Hansen

Cancer Genetics - Editorial highlights issues facing acceptance of cancer genetics uses

Cancer Genetics - Mutation panel described for screening BRCA1/2 mutations in French Canadians

Cancer Genetics - Penetrance functions for software predicts cancer risk among BRCA1/2 carriers

Cancer Research - Avastin plus the FOLFOX4 study achieved primary endpoint of overall survival

Cancer Research - HSPB9 is a cancer/testis antigen; it may interact with dynein subunit TCTEL1

Cancer Research - Pharma company announces manuscript publication for anticancer drug

Cancer Therapy - Company files IND with U.S. FDA for T-cell clinical trials

Cancer Treatment - MammoTest Breast Biopsy System cleared as platform for breast brachytherapy

Cardiac Development - Multiple aspects of embryonic cardiac morphogenesis are sensitive to GATA4

Cardiac Development - Plakophilin 2 is an essential morphogenic factor of the heart

Cardiovascular Disease - Biopharma company announces completion of chronic heart failure trial

Cardiovascular Disease - Wound healing drug proven to improve cardiac function after heart attack

Caregiver Support - NIH-funded study seeks volunteers to test effect of phone support for caregivers

Central Nervous System - Cooperative research program funds program to innovate drug-screening technology

Chicken Genome - Sequencing consortium publishes results

Chronic Hepatitis C - Regimented retreatment benefits a select group of hepatitis C non-responders

Collaboration - Biopharm company enters agreement with Tulane U. for growth hormone development

Collaborations - Partnership formed with Daiichi Suntory for Phenoptin to treat phenylketonuria

Colorectal Cancer - Cancer drug shown to improve survival in metastatic colorectal cancer regimens

Colorectal Cancer - Shikonin induces apoptosis in colorectal carcinoma cells

Cystic Fibrosis - Biopharma company files IND with U.S. FDA for cystic fibrosis treatment

Cystic Fibrosis - Export of cystic fibrosis conductance regulator uses a di-acidic exit code

Cystic Fibrosis - Possible new treatment option for cystic fibrosis announced

Cystic Fibrosis - Stimulation of cystic fibrosis transmembrane conductance regulator reported

Cystic Fibrosis - Two 9-anthracene binding sites on CFTR channels are located outside of R-domain

Dermatology - DNA array distinguishes classic gene sets in the human epidermis

Developmental Biology - Phylogenetic analyses of asymmetry reveal insights into how development evolves

Diabetes Genomics and Genetics - CAG/CAA repeat sequence in the TBP gene associated with type 1 diabetes

Diabetes Genomics and Genetics - Distinct idiotypes of insulin autoantibody in type 1 diabetes identified

Diabetes Genomics and Genetics - IL-6 gene polymorphisms associated with type 2 diabetes

Diagnostics - Company gets California license for new advanced cancer diagnostics laboratory

Diagnostics - Molecular genetic detection methods diagnose pathogens in brain abscesses

Diagnostics - Novel method eliminates platelet error source in PBL mDNA quantification by rPCR

Diagnostics - SenoScan2 digital mammography system launched

Disease Associations - Chaperones and amyloid beta aggregation, inhibition revealed

Disease Associations - Genes linked to cholesterol metabolism do not correlate with Alzheimer disease

Drug Metabolism - CYP2C19 genotype determines extent of fluvoxamine/lansoprazole interaction

Drug Resistance - Genetically diverse Staphylococcus aureus strains thrive in Australia

Drug Therapy - Beneficial effects are associated with prevention of myofibrillar remodeling

Embryogenesis - Hsp47 is required for molecular maturation of type IV collagen

Embryonic Stem Cell Research - DNA hypomethylation blocks ESC differentiation/induces histone hyperacetylation

Embryonic Stem Cell Research - Glycogen- and albumin-producing hepatocyte-like cells generated from ESCs

Embryonic Stem Cell Research - Temporal expression changes during differentiation of NSCs derived from ESCs

Enzymology - Chitin synthases from Entamoeba characterized

Enzymology - Glucuronidase gene transfer corrects murine lysosomal storage disease

Epilepsy - Effect of ketogenic diet on hippocampal gene expression determined

Equine Encephalitis - Equine encephalitis virus adaptation to epizootic vectors influence spread

Escherichia Coli - Complete nucleotide sequence determined for drug resistant E. coli outbreak

Esophageal Cancer - Genes involved in zinc-induced tumor cell apoptosis identified

Eye Health - Biotech company announces discovery of treatment of ischemia-induced retinopathy

Finance - DNA-focused company to raise approximately $6M in private placement

Finance - Pharma company releases financial results

Gastric Acid - Rabeprazole rapidly suppresses the gastric proton pump and acid secretion

Gastroenterology - PillCam ESO receives marketing clearance from U.S. FDA

Gene Inhibition - Gene transfer arrests nuclear factor-kappa B-dependent inflammatory response

Gene Profiles - Lamina-associated polypeptide 2 alpha isoforms are strictly mammalian entities

Gene Promotion - Two-step transcriptional amplification-based vectors ease transgene scrutiny

Gene Restoration - Gene repair shows promise for treating familial amyloidotic polyneuropathy

Gene Silencing - RNA interference blocks a key protein that stabilizes tumor vessels

Genetic Disorders - CYP7A1 gene changes influence lipids and cholesterol in select populations

Genetic Testing - Quantitative fluorescence-PCR recommended for rapid aneuploidy testing

Genetics - Initiative to explore genetic diversity for nearly half the world's population

Genomics - High-throughput mutation detection study on E. Coli published

Genomics - ITGB3 may be an important serotonin quantitative trait loci

Genomics - Novel GeneSwitch system regulates expression of sFRP-1 protein

Genomics and Genetics - Molecular evolution of Drosophila sex-biased genes elucidated

Genotyping - Rolling circle whole-genome amplification furnishes accurate genotypes

Genotyping - Stutter correction improves genotypic analyses of pooled DNA samples

Geriatric Medicine - Centenarians are of scientific interest as models of resistance to dementia

Geriatrics - Rodents display age-related changes in brain prodynorphin expression

Glaucoma - Scientist investigates laser technology for glaucoma treatment

Growth & Development - Direct role of stimulatory G protein in growth plate development revealed

HIV/AIDS - New antiAIDS drug AIDFAREL released

HIV/AIDS - Program offers HIV patients faster access to FUZEON

HIV/AIDS Education - Year-long AIDS awareness campaign launched in India

HIV/AIDS Genetics - Adapted chimpanzee genes may play key role in combating AIDS

HIV/AIDS Microbicide - Mannose-specific plant lectins are microbicidal against HIV-1

HIV/AIDS Pathogenesis - RA signaling contributes HIV latency establishment in monocytes/macrophages

HIV/AIDS Research - Endogenous RT activity is the best surrogate measure of infectious HIV-1 titer

HIV/AIDS Research - Genetic variants of APOBEC3G accelerate HIV-1 disease progression

HIV/AIDS Research - HIV-2 Gag interacts with PRP4 and inhibits phosphorylation of splicing factor 2

HIV/AIDS Research - Hsp16 inhibits HIV-1 by suppressing Vpr-specific activities

HIV/AIDS Research - Interactions between hnRNP A2 and HIV-1 A2REs influence HIV-1 gene expression

HIV/AIDS Research - Lentiviral cDNA library used to clone HIV-1-induced cell death inhibitor

HIV/AIDS Research - Reemergent R5 HIV more closely related to its predecessor than to X4 strains

HIV/AIDS Research - Unintegrated HIV-1 DNA participates in virus replication

HIV/AIDS Therapy - CXCR4 inhibitor AMD3100 has side effects/does not decrease HIV viral load

HIV/AIDS Therapy - HIV-1 protease inhibitors block TLR2 and TLR4-induced NF-kappa B activation

HIV/AIDS Therapy - Indinavir impairs protein synthesis and phosphorylations of MAPKs in myocytes

HIV/AIDS Therapy - Mega-HAART causes rapid HIV decay in HAART-experienced children

HIV/AIDS Therapy - New class of NNRTIs are highly microbicidal against HIV-1

HIV/AIDS Therapy - Not all antiretroviral medications cross the blood-testis barrier

HIV/AIDS Therapy - Risk of virologic failure with LPV/r increased in children pretreated with PIs

HIV/AIDS Treatment - Study of drug's effects in antiretroviral nonresponding HIV infections published

Haemonchus Vaccine -  Haemonchus protease mRNA sequences are extremely abundant and diverse

Headaches - Enrollment completed in clinical trial of migraine treatment in triptan users

Hematology - Uniparental isodisomy defines the origins of an afibrogenemia proband

Hepatitis - PEGASYS combination therapy eradicates hepatitis C in 50% of "healthy" carriers

Hepatitis C Virus Therapy - Combination therapy containing ribavirin generates HCV RNA mutagenesis

Hepatology - Liver site-specific gene transfer generates protein in murine models

Hyponatremia - U.S. FDA grants approval for investigational drug to treat hyponatremia

Imaging - Technology company introduces ImageChecker DMax CAD

Immunology - Genes with altered expression in thymocyte positive selection identified

Inflammation - Mesangial pro-inflammatory genes analyzed, inhibition revealed

Inflammation - Poly(ADP-ribose) polymerase-1 guides inflammatory response in mice

Intestinal Cancer - Epiregulin deficiency does not alter intestinal cancer susceptibility

Kaposi Sarcoma-Associated Herpesvirus - Defective KSHV is present in KS tumors and primary effusion lymphoma cells

Kaposi Sarcoma-Associated Herpesvirus - KSHV latent nuclear antigen disruption leads to abortive episome persistence

Kidney Disease - RNA targeting Fas protects mice from renal ischemia-reperfusion injury

Legal Issues - Biosciences company wins $14.2 million arbitration award

Licensing Agreement - Dyax grants use of its antibody phage display libraries for antibody development

Listeria Monocytogenes -  L. monocytogenes isolates form distinct but overlapping populations

Liver Disease - Gene transfer procedures may correct inborn liver metabolism disorders

Lung Cancer - Potential genetic biomarkers of NSCLC identified

Marfan Syndrome - Renal phenotype characterized in a mouse model of Marfan syndrome

Mental Health - Effects of chronic CRF overexpression determined in mice

Metabolic Syndrome - UCONN, personalized medicine company, collaborate on obesity, metabolic syndrome

Miscarriage - Gene defect may be a cause of miscarriage

Multiple Sclerosis - Genetic targets of methylprednisolone therapy identified

Multiple Sclorosis - Relapsing multiple sclorosis treatment approved by U.S. FDA

Mutagenesis - Concurrent gene and protein analyses expose p53 status in liver cancer patients

Mutagenesis - HLA-E polymorphism may contribute to the formation of nasopharyngeal carcinoma

Mutagenesis - New splice site mutations in the WAS gene cause Wiskott-Aldrich syndrome

Mutagenesis - Proteolipid protein 1 gene point mutations convey spastic paraplegia 2 severity

Mycobacteria - Novel mycobacterium isolated from patients with febrile syndrome

Nanotechnology - Diagnostic products developer funds nanotechnology research

Nanotechnology - Scientists embed computation in a DNA crystal to create microscopic patterns

Neurodegeneration - Early onset Alzheimer disease maps to the T/T genotype of interleukin-1

Neurodegeneration - Essential fatty acids may slow Huntington disease progression

Neurodegenerative Disease - The function of synuclein in the etiology of Parkinson disease is an enigma

Neurology - Chromosomal clustering defines the genetic character of forebrain structures

Neurology - HT2A receptor polymorphism destabilizes signaling

Obesity - Forecast: New drug could be safer for treating obesity than previous drugs

Obesity - Pharma company expands research scope to include obesity and diabetes

Obesity - Survey finds Americans believe obesity treatment should be included health plans

Obesity Genomics and Genetics - Murine body weight QTLs, Bwq1 and Bwq2, characterized

Obesity Genomics and Genetics - QTL affecting body mass in mice identified

Obesity Genomics and Genetics - Two ancestral forms of neuromedin U-2 receptor gene reported

Obesity and Diabetes - proopiomelanocortin gene polymorphism linked to insulin in obesity

Occupational Health - Genetics affect coke-oven worker susceptibility to chromosomal damage

Oncology - Mechanisms of tumor suppressor RASSF1A elucidated

Oncology - Pharma companies announce oncology therapeutics research milestone

Ophthalmology - Antisense oligonucleotides focus on the control of ocular angiogenesis

Organ Transplantation - Riverdale woman shares kidney with baby sitter's daughter

Osteoporosis - Association examined between TNFRSF1B polymorphisms and BMD

Osteoporosis - Foundation endorses Surgeon General's report on osteoporosis

Osteoporosis - Pharma company expands scope of new drug application PREOS

Osteoporosis - Software developer includes osteoporosis testing on MicroDose Mammography system

Ovarian Cancer - Potential ovarian cancer susceptibility allele of low penetrance identified

Pain Research - Utility of microarrays and laser capture microdissection reviewed

Pancreatic Cancer - Putative amplification target genes identified

Parkinson Disease - Alpha- and beta-synucleins analyzed, deletion affects synaptic functions

Parkinson Disease - Neuromelanin inhibits proteosome activity in dopamine neurons

Parkinson Disease - Proteasome inhibition sensitizes dopamine neurons

Patents - Maker of microarrays for genomic research gets patent for dispensing technology

Patents - SynX granted key European patent for stroke diagnostics

Pediatrics - Genes have a significant influence on pubertal changes in youth

Peptide Synthesis - Calcitonin-gene regulated peptide and regenerating sensory axons investigated

Periodontal Disease - NIDCR launches unique initiative on oral biofilm

Personnel - Biotech company names vice president of sales

Personnel - Biotechnology company announces new board member

Personnel - DNA analysis company appoints CEO

Personnel - Dr. Steven Nissen named chairman of medical and scientific advisory board

Personnel - Graham Dixon joins genomics company as CSO

Personnel - H. Thomas Watkins appointed CEO

Personnel - Paul N. Lucas appointed chairman of genetics-focused biosciences company board

Pharmacokinetics - Pharmacokinetic variability of metoprolol in metabolizers of CYP2D6 was large

Philanthropy - Moyer Foundation donates $1.5 million for early-detection cancer research

Physiology - Activated hypoxia-inducible factor boosts angiogenesis in ischemic muscles

Prions - Trimethylamine N-oxide prevents prion misfolding

Prostate Cancer - Metastatic hormone-refractory prostate cancer treatment trial results reported

Protein Regulation - Electrical signals stimulate proteins that heal orthopedic injury or arthritis

Proteomics - GSK3 has multiple regulatory roles in Dictyostelium development

Reproductive Biology - Enzyme discovered that generates egg-protecting hydrogen peroxide

Reproductive Medicine - ET-1 and NO production characterized in luteal endothelial cells

Rheumatoid Arthritis - Premature stem cell aging provides basis for immune-mediated tissue damage in RA

SARS - ACE1 polymorphism may influence progression of pneumonia in SARS

Skin Cancer - p53 point mutation at Ser389 increases sensitivity to UV radiation

Spinal Muscular Atrophy - Survival motor neuron protein isoforms characterized

Stem Cell Research - Amnion mesenchyme cells express phenotypes of neuroglial progenitor cells

Stem Cell Research - Creating $3 billion stem cell agency no small feat

Stem Cell Research - Distinct cell "side population" has high drug efflux capacity in tumor cells

Stem Cell Research - Downstream genes of ascidian muscle determinant gene Ci-macho1 identified

Stem Cell Research - Lentiviral vectors funnel genes into neural stem cells for therapeutic use

Stem Cell Research - Tel/Etv6 is essential and selective regulator of adult HSC survival

Stress - NF-kappaB, evoked by psychosocial stress, may directly target vessels, kidneys

Survival and Mortality - VEGF-A expression is a prognostic marker for angioimmunoblastic T-cell lymphoma

Transfection - Electroporation-assisted gene transfer yields gene expression in murine muscles

Transfusion Medicine - Paper: RhAG plays key role in maintaining pH balance in red blood cells

Transplant Medicine - Research sets gestational window for harvesting porcine fetal pancreatic tissue

Tularemia Vaccine -  Francisella tularensis genes encoding membrane-associated proteins identified

Vaccine Development - Genome-based vaccines reviewed

Varicella Zoster Virus Infection - Severe abdominal pain is important sign of VZV infection in SCT recipients

Vascular Development - Notch activation is essential for embryonic vascular remodeling

Viral Genomics - Geographical differences sway the unique variations of hepatitis B subtypes

Viral Vectors - Optimized inducible vectors improve transfection and transgene expression

Virology - Lentiviral transduction of cord SCs yields high-level beta-globin expression

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