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Genomics and Genetics Weekly

Susan Hasty, Publisher

Table of Contents . . . May 6th, 2005

Non-Subscriber - Summaries Only

Related Areas: Other Issues in Genomics and Genetics Weekly | Other Publications

Genetics & Genomics - Database of human organ gene expression profiles developed

Lipid Studies - Chromosomal regions have been identified for genes influencing LDL cholesterol

Pancreatic Cancer - DNA copy number changes strongly affect transcriptional patterns

Sleep Disorders - TFAP2B-dependent functions may be implicated in the normal regulation of sleep

AIDS Research - Initiating ART in primary SIV may lead to mucosal immune system restoration

Acinetobacter Outbreaks -  Acinetobacter baumannii nosocomial outbreak strain produces PER-1 ESBL

African Swine Fever - Invader assay adapted for African swine fever virus DNA detection

Allergy & Immunology - Inhaled antisense oligonucleotide alleviates murine asthma

Alzheimer Disease - Research in Alzheimer disease provides new insights

Alzheimer Disease - Seladin-1 may mediate estrogen's neuroprotective effects

Obesity Pathogenesis - Recent findings in obesity pathogenesis provide new insights

Androgen Receptor - Notch signaling mediator Hey1 is an androgen receptor corepressor

Angelman Syndrome - Characteristics of epilepsy in Angelman syndrome patients elucidated

Angina - Phase IIb GENASIS clinical trial receives recommendation to proceed

Antibiotics -  Staphylococcus aureus examined, roles of penicillin-binding protein 2 shown

Antigenic Responses - Viral immune response examined, inhibition due to antigen presentation revealed

Antiphospholipid Syndrome - Rare cause of disseminated microvascular thrombotic injury reported

Tissue Engineering - Studies advance knowledge in tissue engineering research

Antisense Technology - Morpholino antisense oligomers targeting human midkine fights cancer

Antitumor Activity - Antitumor activity of an ethanol extract of Nigella sativa seeds

Apoptosis - Data advance knowledge in apoptosis research

Apoptosis - E1A activated transcription of p73 and Noxa to induce apoptosis

Apoptosis - Tbx3 expression related to apoptosis and cell proliferation in rat bladder

Apoptosis - Variation of human tumor necrosis factor receptor 2 affected apoptosis

Virology - Researchers publish new studies and findings in the area of virology

Apoptosis - p53 has crucial role in signal transduction pathways of silica-induced apoptosis

Aspergillosis - Cloning, use of sC as homologous marker for A. niger transformation studied

Asthma - Reports describe recent advances in asthma research

Atherosclerosis - Atherosclerosis and collagen deposition studied, phospholipase role shown

Atherosclerosis - Effects of silencing leukocyte-type 12/15-lipoxygenase reported

Atherosclerosis - New research in the area of atherosclerosis detailed

Virology - Researchers report details of new studies and findings in the area of virology

Autism - Gene mutated in cancer found in some with autism

Autoimmune Disease - Toll-like receptor 9 polymorphism is not linked to systemic lupus erythematosus

Bacteriology - PCR detects and quantitates benzoyl-CoA reductase genes from bacteria

Biomedical Engineering - Technological advances exploited to engineer cardiac tissue

Biotechnology - ParAllele BioScience inks license and comarketing agreement

Birth Defects - DLC-1 deemed essential for embryonic development

Virology - Researchers' work adds to virology body of knowledge

Birth Defects - Maternal polymorphisms in CYP1A1, GSTM1, and GSTT1 linked to risk of hypospadias

Bone Marrow Transplantation - Early VRE infection post-BMT associated with rapid deteriorating clinical course

Bovine Viral Diarrhea Virus - Cellular insertion in NS2 gene of BVDV is potential pathogenic marker

Breast Cancer - Decreased activity in TGF-beta pathway linked to increased disease risk

Breast Cancer - Effects of estrogen and tamoxifen on tumor gene expression characterized

Breast Cancer - Hereditary breast cancer examined

Breast Cancer - Ki67 breast cancer marker correlates with regulation of apoptosis-related genes

Breast Cancer - Methyl mercury influences growth-related signaling in breast cancer cells

Breast Cancer - PEA3 and AP-1 involved in regulation of breast cancer-linked gene, mammaglobin

Breast Cancer - Real-time PCR measures Epstein-Barr virus DNA in archival breast adenocarcinomas

Breast Cancer - Reports add new data to breast cancer research

Breast Cancer - Tenascin-W implicated as breast cancer diagnostic marker

Business Update - Dr. James W. Ryan, IP company, collaborate to commercialize key genomic patents

Business Update - Genetronics announces name change

Cancer Genetics & Genomics - African American women less likely to undergo genetic testing than white women

Cancer Genetics & Genomics - Combined multiple high-throughput analyses identify breast cancer genes

Cancer Immunotherapy - Tumor cell genes encode ligands recognized by CD4 regulatory T cells

Cancer Inhibitor - Leukemia inhibitory factor receptor characterized in goldfish

Cancer Prevention - Anthocyanidins from fruits and vegetables inhibit tumor cell growth

Cancer Risk Factors - HBV genotype A raises liver cancer risk in Bantu-speaking sub-Saharan Africans

Cancer Therapy - Eradication of tumors in various mouse models by company's BiTE drugs reported

Carcinogenesis - Carcinogens generate gene-specific changes in murine liver tumors

Carcinogenesis - Coal tar mixture activated carcinogenesis

Cardiac Development - Study of the zebrafish has contributed insight into GATA transcription factors

Cardiology - Periadventitial angiopoietin-1 gene transfer generates neovascular growth

Cardiomyocytes - Findings describe new data in cardiomyocytes research

Cervical Cancer - p27(Kip1) downregulated telomerase activity in human cervical cancer

Chikungunya Virus - RT-PCR without RNA extraction detects/quantifies African Chikungunya viruses

Cholera Epidemics - Seasonal cholera epidemics inversely correlate with cholera phage prevalence

Chromatin - Chromatin-polycomb protein association examined, physiology clarified

Chronic Hepatitis C - Immunoregulatory cytokine polymorphisms do not predict hepatitis C clearance

Chronic Myeloid Leukemia - Recent approaches to CML interrupt key signaling pathways activated by Bcr-Abl

Clinical Trials - Patient enrollment for trial of implant for central precocious puberty completed

Cloning - Cloned beef and milk meet industry standards

Colitis - Intestinal homeostasis falters in mice that cannot produce interleukin 10

Collaborations - Agreement extended on GeneChip technology to breast cancer diagnostics

Collaborations - Geron enters joint venture for licensing animal-cloning technologies

Colon Cancer - Curcumin inhibits colon cancer via PPARgamma activation

Colon Cancer - Gastrin promotes colon cancer via CCK-2 receptor-mediated COX-2 induction

Colon Cancer - Gene test could predict treatment success for bowel cancer patients

Colorectal Cancer - n596 gene deletion causes hereditary nonpolyposis colorectal cancer

Cyclooxygenase - Macrophage prostaglandin production studied, molecular aspects elucidated

DNA Research - Italian patent application filed on transrenal DNA technology to detect HIV, TB

DNA Research - Researchers develop new method to detect loss, gain of DNA regions across genome

Dermatology - Interleukin 10 variants correlate with overall survival in advanced melanoma

Diabetes Genomics and Genetics - Missense mutations in insulin promoter factor not linked to diabetes

Diabetes Genomics and Genetics - No clear link found between nuclear factor 4-alpha gene and diabetes

Diabetes Genomics and Genetics - Retrovirus-like long-terminal repeat DQ-LTR13 linked to type 1 diabetes

Diabetes Pathogenesis - Common adiponectin polymorphisms predict development of type 2 diabetes

Diabetes Pathogenesis - Enzyme subunit deletions have opposite effects on insulin sensitivity

Diabetes Pathogenesis - Munc18c heterozygous knockout mice susceptible to glucose intolerance

Diabetes Therapy - Chimeric rice seeds stimulate beta-cell insulin secretion

Diabetes Therapy - Transcription factors increase insulin production in diabetic mice

Diagnostics - Blood RNA assays detect mutations linked to hereditary kidney disease

Diagnostics - Chromosomal sperm nuclei profile could be used as a predictive test before ICSI

Diagnostics - Laboratory collaborates with technologies supplier on molecular diagnostics

Diagnostics - PCR-RFLP discriminates Campylobacter jejuni strains

Diet & Nutrition - Epithilial cell biotin uptake studied, cellular and molecular aspects defined

Diet & Nutrition - Plasma tHcy in Greek children was associated with folate, vitamin B12, glucose

Disease Associations - Morphological remodeling in ulcerative colitis correlated with disease duration

Disease Associations - Synuclein aggregation studied, role of p25alpha revealed

Drug Development - Glycerophosphoinositols inhibit tumor cells from invading extracellular matrix

Drug Development - Novel apolipoprotein E-derived agent improves outcome after brain trauma

Drug Development - Replicon systems are not exact predictors of anti-hepatitis C activity

Embryonic Stem Cell Research - Embryonic stem cells generate airway epithelial tissue

Endocrinology - Genetic assays of adrenocortical tumors define cancer and recurrence risk

Endocrinology - Layered mutations perpetuate thyroid hormone resistance

Endocrinology - Limited diffusion impedes the transfection of pituitary tumors

Endocrinology - Researchers report details of new studies and findings in the area of endocrinology

Environmental Health - Dietary exposure to Aroclor 1254 alters gene expression in frogs

Enzymology - Rubinstein-Taybi syndrome is caused by CBP and EP300 gene mutations

Epidemiology - Nosocomial outbreak investigation database developed

Epirubicin - Effects of epirubicin on proliferation of Ehrlich ascites carcinoma cells

Epstein-Barr Virus - Epstein-Barr virus dUTPase upregulates the production of TNF-alpha

Escherichia Coli - Mercury bioaccumulation and cell propagation by E. coli

Fidgetin - Fidgetin analyzed, functional characterization reported

Finance - Biodefense grant awarded to analyze genomes

Finance - Molecular-diagnostics company closes follow-on series C funding

Food Safety - Genetic testing company agrees to produce DNA test for livestock

Gastric Cancer - Human lymphocyte antigen class I expression in gastric cancer examined

Gene Research - Genetic elements affect susceptibility to hemolytic uremic syndrome

Gene Silencing - PEI powers small interfering RNA into cells

Gene Transfer - Cells internalize biologically active recombinant DNA spontaneously

Gene Transfer - Optimized ligand conjugation degree improves PPA gene carrier ability

Genetics & Genomics - Model facilitates functional analysis of genes from public microarray data

Genetics & Genomics - New application for gene expression profiling of rat and mouse tissues

Genetics & Genomics - New signature genetics test allows physicians to personalize drug therapy

Genetics & Genomics - Study demonstrates utility of haplotype maps and panels for linkage studies

Genetics & Genomics - Study explains mechanisms underlying differential regulation of ACCbeta genes

Glaucoma - Novel adult-onset POAG gene identified

Gynecology - Hypermethylation associated with carcinogenesis of endometrium

Gynecology - Specific KIR genes and genotypes may be linked to cervical cancer neoplasia

HIV-2 Epidemiology - SIVsm strains isolated from Sierra Leone bush meat highly divergent from HIV-2

HIV/AIDS Diagnostics - Early response to antiretroviral treatment predicts long-term response

HIV/AIDS Diagnostics - NucliSens EasyQ correlates with Roche Amplicor in monitoring HIV-1 RNA in Africa

HIV/AIDS Diagnostics - Sensitive PCR estimates HIV-1 in CD4+ cells in patients responding to HAART

HIV/AIDS Drug Development - CCR5 antagonist suppresses replication/CPE in HIV-infected mouse model

HIV/AIDS Drug Resistance - Recent findings in HIV/AIDS drug resistance described

HIV/AIDS Epidemic - Assay screens HIV-1 in epidemics characterized by mono/dual clade predominance

HIV/AIDS Pathogenesis - APOBEC3G antiviral function can dissociate from cytidine deaminase activity

HIV/AIDS Pathogenesis - HIV-1 catalytic core domain residues important for HIV-1 replication/integration

HIV/AIDS Pathogenesis - HIV-1 clade promoters strongly influence replication spatial/temporal dynamics

HIV/AIDS Pathogenesis - HIV-1-specific CD4+ cell turnover and activation increase upon viral rebound

HIV/AIDS Pathogenesis - POSH is essential for HIV-1 production

HIV/AIDS Research - "Preloaded" natural killer cells efficiently lyse HIV-infected target cells

HIV/AIDS Therapy - NNRTIs and RNase H inhibitors given in same HAART regimen may be beneficial

HIV/AIDS Therapy - Older antiretroviral strategies show renewed interest

HIV/AIDS Vaccine - Data on DNA-binding protein to correct human genes published online in 'Nature'

HIV/AIDS Vaccine - Segments of consecutive AA residues of HIV gp120 proposed as vaccine candidates

HIV/AIDS-Associated Emphysema - AIDS-associated emphysema due in part to HIV-1 infection of alveolar macrophages

HIV/AIDS-Related Hodgkin Lymphoma - LMP-1 deletion mutants highly associated with HIV-related Hodgkin's lymphoma

Head & Neck Cancer - Overexpression of p63 associated with poor prognosis in head and neck cancers

Hearing Disorders - Aminoglycoside controls hearing loss in those with A1555G mutations

Heat Shock Proteins - Heat shock studied, induction of histone phosphorylation revealed

Helicobacter Pylori -  H. pylori infection correlates with DNA damage in gastric mucosa cells

Hematology - Major functional genes become deregulated in acute myeloid leukemia subtypes

Hepatitis B Therapy - Long-term lamivudine improves outcomes for chronic hepatitis B patients

Hirschsprung Disease - Gene regions beyond protein instructions important in disease

Histone - Phe/Tyr switch analyzed, effect on histone lysine methyltransferases defined

Human Herpesvirus 6 - HHV-6B genes expressed during persistent infection identified

Human Papillomavirus-Associated Cancer - HPV strongly associated with several cancers independent of HIV infection

Hypertension - Rare promoter and coding region variants sway angiotensinogen levels

Hypertension - Studies advance knowledge in hypertension research

Immunology - Novel in vivo model facilitates study of alveolar macrophage gene function

Immunoreceptors - Immunoreceptor-ligand links studied, nature of associations clarified

Immunotherapy - Pre-emptive immunotherapy prevents relapse in children with MDS after ASCT

Inflammatory Diseases - Common factor is behind myocardial infarction, rheumatism and MS

Influenza Virus - Avian influenza strain causes lethal systemic infections in ferrets

Kidney Cancer - von Hippel-Lindau (VHL) tumor suppressor protein sensitized cancer to bortezomib

Leukemia - AS132 targeted specific proteins for destruction by the proteasome in leukemia

Leukemia - Distinct gene expression patterns linked to FLT3- and NRAS-activating mutations

Leukemia - Eight twenty-one homologues expressed during hematopoietic differentiation

Leukemia - SUMO-1 binding required for modification and colocalization with leukemia

Liver Cancer - HDPR1 downregulated in hepatocellular carcinoma

Liver Cancer - Molecular signatures characterize hepatocellular carcinoma

Liver Damage - Contrasting effects of telomere shortening explored

Liver Regeneration - Follistatin encourages retroviral-mediated gene transfer in liver cells

Lung Cancer - Glucocorticoids induce 15-PGDH in lung adenocarcinoma cells

Lung Injury Biomarker - Elevated sTNF receptors associated with morbidity/mortality in acute lung injury

Major Depressive Disorder - Underlying molecular mechanisms elucidated

Malaria - Mutations in pfmdr1 incur fitness cost in Plasmodium falciparum

Matrix Metalloproteinase - Ligament fibroblasts and alveolar bone cells studied, mRNA expression revealed

Melanoma - Eugenol caused melanoma growth suppression through inhibition of E2F1

Melanoma Vaccines - Studies advance knowledge in melanoma vaccines research

Meningitis - NucliSens EasyQ Enterovirus assay rapid and accurate

Mental Health - The features of schizotypy and personality share common genetic elements

Mergers & Acquisitions - Life sciences and high technology company completes acquisition of Proligo Group

Mitochondria - Correction of defects in patient-derived mutant mitochondria by tRNA* studied

Natural Killer Cells - Natural killer T cell development studied, nature of regulation clarified

Neurodegeneration - Oxidative stress upreglates genes associated with Alzheimer disease

Neurology - Expanded polyglutamine peptides studied, protein effects clarified

Neurology - Neuronal Ca2+ channel studied, role of phosphatase channel defined

Neurology - Neuronal dysfunction modeled, role of ubiquitin and nuclear inclusions revealed

Neurology - Prader-Willi syndrome protein necdin studied, role in axonal outgrowth defined

Neuroscience - Genetic interactions may establish susceptibility to anorexia nervosa

Neuroscience - Genetically modified fibroblasts treat Parkinson disease models

Neuroscience - Prostate innervation does not increase in postnatal rodents

Neuroscience - R208H mutations influence vulnerability to Creutzfeldt-Jakob disease

Obesity Genomics and Genetics - Human resistin gene polymorphism associated with visceral obesity

Obesity Pathogenesis - Findings describe new data in obesity pathogenesis research

Obstetrics - Pregnancy complications related to low levels of anti-clotting proteins

Oncogenesis - Unchecked DNA replication drives earliest steps toward cancer

Oncology - Alterations of pre-mRNA splicing in cancer analyzed

Oncology - Researchers provide details of new studies and findings in the area of oncology

Oncology - The genetics of bladder tumor progression in humans and mice are not the same.

Ophthalmology - Therapeutic target identified for modifying proteolytic environment

Osteocarcoma - PAF receptor antagonist potent/cytotoxic Ca2+ mobilizer in osteosarcoma cells

Osteopetrosis - High peripheral blood SCs enable autologous backup before SCT for osteopetrosis

Ovarian Cancer - Genetic changes in primary and secondary tumor sites compared

Ovarian Cancer - Progesterone-regulated tumor suppressor genes identified

Ovarian Cancer - Shape-altering genes explain development of different forms of disease

Parkinson Disease - Low neurotrophic factor levels lead to the loss of dopaminergic neurons

Parkinson Disease - Parkin examined, role in ubiquitination of synphilin-1 revealed

Personnel - Personalized medicine company adds two to scientific advisory board

Physiology - Basal disc cell differentiation studied, protein requirement and role defined

Physiology - Decapping reaction of mRNA studied, requirement for Dcp1 observed

Prenatal Diagnostics - Licensing agreement expands hCGa-based prenatal risk assessment

Product Licensing - Genomics company obtains exclusive license to develop new anemia drug

Prostate Cancer - Inhibition of IkappaB kinase activity promoted apoptosis in prostate cancer

Prostate Cancer - Phase I/II clinical trial begins in patients with recurrent prostate cancer

Prostate Cancer - Radiotherapy and sKDR gene delivery demolish malignant prostate tumors

Protein Expression -  Cryptococcus neoformans protein expression studied, genes implicated

Protein Signaling - Candidate EGFR gene targets identified in Drosophila

Proteomics - Endostatin works with membranes bearing phosphatidylserine to cause cell death

Proteomics - Exercise changes renal atrial natriuretic peptide receptor gene expression

Proteomics - Novel chip assay facilitates assessment of DNA-binding specificity

Proteomics - Researchers detail new studies and findings in the area of proteomics

Pulmonary Medicine - Repair-related gene expression is time-dependent following diaphragm injury

Pulmonary Medicine - Researchers describe findings in pulmonary medicine studies

Pulmonary Medicine - Shortened viral expression cassettes transfer genes to lung epithelia

RNA Research - Genome-wide RNAi screen of C. elegans published

Receptor-Mediated Signaling - G protein-coupled receptor studied, agonists and antagonists localized

Reproductive Medicine - LH-regulated genes identified in the primate corpus luteum

Reproductive Medicine - Novel alternative splice variant of BRDT gene cloned

Reproductive Toxicology - Vinclozolin- and procymidone-induced genes identified in rat ventral prostate

Restless Legs Syndrome - Major cause of insomnia has complex genetic involvement

Rheumatoid Arthritis - LymphoStat-B efficacious in patients with rheumatoid arthritis

Rheumatology - Non-transforming herpesvirus saimiri vectors regulate inflammatory cytokines

Roberts Syndrome - Fifteen-year hunt uncovers gene behind "pseudothalidomide" syndrome

SARS Coronavirus - Reports describe recent advances in SARS coronavirus research

Sexual and Reproductive Medicine - Altered ubiquitin-specific protease 26 gene may affect male fertility

Simian T-Cell Lymphotropic Virus Type 1 - Africa is origin of Tulane primate center STLV-1 sooty mangabey strain

Sjogren Syndrome - 5-Aza-CdR treatment induces aquaporin-5 expression in ductal cells

Skin Cancer - 1,25-Dihydroxyvitamin D-3 and analogues protect against UVB-induced DNA damage

Smooth Muscle - Fibulin-5 deficiency analyzed, role in smooth muscle function revealed

Stem Cell Research - A new embryonic stem cell line encodes a key cystic fibrosis mutation

Stem Cell Research - Hes1 has inhibitory role in Paneth cell differentiation in small intestine

Stem Cell Research - LIF induces kidney stem-like cell multilineage differentiation via cadherin 16

Stem Cell Research - Prolonged-survival neonatal PMNs have enhanced inflammatory/cytotoxic response

Stem Cell Research - Research needed to determine efficient delivery of SCs to appropriate sites

Stem Cell Research - SVP modifies self-renewal SC program to allow chronological change of cell fates

Stem Cell Research - Sonic hedgehog controls stem cell behavior in postnatal and adult brain

Stem Cell Research - alpha1LG4-5 provides vital signals for SC conversion to polarized epithelium

Stem Cell Research - c-Myb and p300 regulate stem cell proliferation and hematopoiesis

Stem Cell Transplantation - ABO incompatibility does not affect clinical outcome after APBSCT

Stem Cell Transplantation - Circulating DC subsets post-ASCT correlate with acute GVHD severity in children

Stem Cell Transplantation - PBSC graft composition affects outcomes after nonmyeloablative conditioning

Stem Cell Transplantation - Relaxation breathing does not improve leukocyte numbers in AHSCT

Stem-Cell Transplantation - Recent findings illuminate research in stem-cell transplantation

Suicidal Behavior Gene - Serotonin synthesis genes involved in predisposition to suicidal behavior

Testicular Cancer - Transcriptional repression domain in N-terminal region of p53 identified

Tissue Engineering - Researchers describe findings in tissue engineering studies

Toxicity - Podocyte heat shock proteins examined, influence of toxic metals revealed

Toxicology - Sibling profiles uncover a range of valproate-related developmental effects

Transplant Medicine - Noninvasive test to determines risk of rejection in heart transplant patients

Tuberculosis Vaccine - Control of human host immunity to mycobacteria reviewed

Type 2 Diabetes - Diachrome initiative for Native Americans living with type 2 diabetes announced

Umbilical Cord Blood - CB chromosomal aberrations associated with prenatal exposure to carcinogenic PAH

Vascular Graft - Procedure developed to extract RNA from cells seeded onto cylindrical conduits

Vector Development - Coated polymeric double-layered micelles transfect cells with low toxicity

Vector Development - Monoclonal antibody-PEI constructs conduct cell-specific nonviral gene delivery

Vibrio Parahaemolyticus - Vibrio multidrug antiporter studied, essential amino acids identified

Virology - Hepatitis C virus NS5B mutations affect viral load and interferon response

Virology - Hepatitis C virus isolates exhibit NS3 protease heterogeneity

Virology - High-powered living DNA cannon drives viruses

Virology - Recent findings illuminate research in virology

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