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Proteomics Weekly

Susan Hasty, Publisher

Table of Contents . . . January 19th, 2004

Non-Subscriber - Summaries Only

Related Areas: Other Issues in Proteomics Weekly | Other Publications

Amyotrophic Lateral Sclerosis - ALS disease stage related to changes in tau protein and S100 beta

Allergy Medicine - Childhood allergies can be induced by the environment early in development

HIV/AIDS Proteomics - Mechanisms of HIV Vif-induced APOBEC3G degradation identified

Hematology - Thrombin interaction with platelet membrane glycoprotein Ib alpha discussed

Hematology - Vectors encoding the heavy and light chains of FVIII correct hemophilia A

Hemophagocytic Lymphohistiocytosis - Familial hemophagocytic lymphohistiocytosis has mutated hMunc13-4

Hepatitis B Vaccine - Immunity persists 4 years after hepatitis B vaccination

Herpes Simplex Virus - Myeloid, not hepatic, C3 controls effectiveness of antibody response to HSV

Huntington Disease - Could a protein have saved Salem's witches from burning at the stake?

Hypertension - High blood pressure may cause increased sE-selectin, sVCAM-1 in serum

Hypothalamus - Chromatin-derived acidic peptide exert effects in hypothalamus

Immune System Function - Study of the unique mechanisms in ocular immune privilege may help other areas

Allergy Medicine - Five IgE epitopes in chicken egg ovalbumin cause allergy

Immunology - Leptin has differential effects on monocyte ROS activity during HIV infection

Immunology - Natural killer cell functions mediated by neuropeptide substance P

Immunology - New label-free immunosensor for proteins is based on imaging ellipsometry

Immunology - Phase I trials initiated for a compound to combat several inflammatory conditions

Immunology - Protein makes LIGHT of cancer

Inflammatory Bowel Diseases - Bowel disease complications can affect the eye; problem can be better managed

Kidney Transplant - Antibody-mediated kidney rejection can now be diagnosed, may soon be treatable

Klebsiella -  Klebsiella oxytoca harbors carbapenem-hydrolyzing beta-lactamase KPC-2

Leukocyte Function - Tetraspanins form functional cell surface microdomains in leukocytes

Liver Cancer - A high percentage of liver cancers have elevated liver-intestine cadherin

Allergy Medicine - Prevention of allergies by antigen avoidance may not always prove beneficial

Liver Disease - Caveolins regulate bile salt and cholesterol metabolism

Liver Transplantation - ICAM-1 is not linked to liver allograft ischemia-reperfusion injury

Lymphocyte Activation - Paracaspase is involved in B cell and T cell NF-kappa B-dependent activities

Lymphocyte Maturation - Activated Notch2 is involved in CD8 T-cell maturation, selects for B1 B cells

Lymphocyte Migration - IL-16 acts on CD4 associated with CCR5, inducing Th1 cell migration

Malaria Enzymology - Lipid-binding domain of PfCCT characterized

Malaria Immunology - In asymptomatic patients, IL-12 suppresses parasitemia and NOS activity

Meningioma - RT-PCR assay can rapidly identify telomerase RNA in intracranial meningiomas

Monoclonal Gammopathy - IgM monoclonal gammopathy increases the risk for lymphoma and other diseases

Multiple Sclerosis - A genome screen of multiple sclerosis reveals 22 associated markers

Allergy Medicine - Research suggests inverse relationship between rheumatoid arthritis and rhinitis

Multiple Sclerosis - A genome-wide screen in HLA-DRB1*1501 positive MS patients yields three new links

Multiple Sclerosis - A genomic screen reveals 191 genes, 11 in the MHC region, linked to MS

Multiple Sclerosis - A linkage disequilibrium screen reveals 12 possible multiple sclerosis markers

Multiple Sclerosis - A whole genome screen including families reveals only one sure gene linked to MS

Multiple Sclerosis - A whole genome study associates 91 markers with multiple sclerosis

Multiple Sclerosis - A whole genome study reveals 46 genes associated with multiple sclerosis

Multiple Sclerosis - Confounding factors need to be worked out of MS whole genome linkage mapping

Multiple Sclerosis - Genetic screens reveal nine markers potentially related to multiple sclerosis

Multiple Sclerosis - Genomics research reveals 10 genes associated with multiple sclerosis

Multiple Sclerosis - Linkage analysis of families with MS shows chromosome 10, 10p15 involved

Alzheimer Disease - Abeta(1-42) can oligomerize into neurotoxins; Ginkgo extract inhibits it

Multiple Sclerosis - MMP-9 degrades endogenous, therapeutic IFNbeta in MS; may be therapeutic target

Multiple Sclerosis - MS patient PBMC have decreased mRNA of apoptosis regulators CD95, caspase-8

Multiple Sclerosis - Targeting of chemokine receptors may be able to control multiple sclerosis

Multiple Sclerosis - Two genome-wide screens of high risk Sardinians show five genes linked with MS

Multiple Sclerosis - Whole genome study of consanguineous Turkish MS families finds linked regions

Mumps - Mumps can be detected by IFA or shell vial culture of throat swab, urine

Murine Melanoma - Fyn and cortactin cooperate in cell migration of metastatic murine melanoma

Narcolepsy - Hypocretin receptor 2 may be attacked in high-axon regions in human narcolepsy

Neurodegeneration - Role of CREB in neurodegeneration reviewed

Neuroscience - Layering defect linked to improper neuronal-glial interaction

Alzheimer Disease - Cerebrospinal fluid markers function as predictors of Alzheimer disease

Neuroscience - Neuropsin is novel opsin identified in mammalian neural tissue

Neutrophil Cytotoxicity - SLP-76 is essential for reactive oxygen intermediate formation in neutrophils

Obesity - Role of ectopic lipids in the metabolic syndrome reviewed

Obesity Therapy - Peripheral GLP-2 has no effect on gastric emptying or satiety

Obstetrics - Short-term exercise has little impact on fluid regulation during pregnancy

Oncology - Cyclooxygenase 2 and survivin are often coexpressed in lung cancers

Ophthalmology - Different eye area DC have different abilities to react, be tolerant of antigens

Osteoarthritis - Chondrocyte HO-1 is regulated by cytokines depending on inflammatory properties

Parkinson Disease - Alpha-synuclein interacting protein gene and Parkinson disease studied

Peptides - Vasoactive intestinal peptide blocks chemokine receptors

Alzheimer Disease - HSPG2 A, APOE epsilon 4 alleles combined increase risk for Alzheimer disease

Pharmaceutical & Drug Development - The lambda-dynamics method improves analysis of HCV protease inhibitors

Population Descendance - Genetic markers show Iranian speakers in Azerbaijan related most to Azerbaijanis

Preeclampsia - High PLA2 levels in decidual tissue may underlie acute atherosis

Prion Disease - Helix 1 peptide elicits antibodies against prion protein in mice

Prostate Cancer - Canadian company announces Phase II clinical study of prostate cancer treatment

Proteomics - Approach to unnatural insertion of amino acids into proteins proposed

Proteomics - JNK and ERK activation in rabbit hippocampus is regulated by lithium

Proteomics - Neovastat stimulates tissue plasminogen activator activity

Proteomics - RACK1 gene regulated by nuclear factor-kappa B and promotes cell survival

Proteomics - Screening platform for protein analysis in intact cells developed

Alzheimer Disease - In vivo reduction of amyloid-beta promoted by mutant copper transporter

Proteomics - The death effector domain protein family may control life and death of cells

Pseudomonas - Scaffolds increase activity of efflux pump inhibitors against Pseudomonas

Receptor Studies - Gastrointestinal functions of proteinase-activated receptors reviewed

Receptor Studies - Role of proteinase-activated receptors in nervous system reviewed

Retinopathy - Thrombospondin-1 is essential for appropriate retinal vascular remodeling

Rheumatoid Arthritis - Heat shock proteins for immunotherapy of rheumatoid arthritis reviewed

SARS - Angiotensin-converting enzyme 2 acts as receptor for SARS virus

SARS - Severe acute respiratory syndrome -associated coronavirus vaccine shows promise in monkeys

Saccharomyces -  Saccharomyces cerevisiae transcription factor defective in spt7 mutants

Salmonella Enterica - SopE, encoded outside the Salmonella SPI-1, is still chaperoned by InvB

Alzheimer Disease - No link found between TrkA polymorphisms and Alzheimer disease in Japanese

Sarcoidosis - Refractory sarcoidosis may improve with infliximab therapy

Schizophrenia - Human frizzled-3 gene on chromosome 8p21 linked to schizophrenia

Schizophrenia - Yeast two-hybrid screens implicate DISC1 in brain development and function

Short Bowel Syndrome - Cell proliferation and survival occur via activation of GLP-2 receptors

Stem-Cell Research - Main-population cells account for vast majority of Sk-34 cell activity

Stem-Cell Research - P-selectin and ICAM-1 influence regulatory T-cell development

Stem-Cell Research - Serum-free medium with SCF can produce mature cord blood-derived mast cells

Stem-Cell Research - Thrombopoietin regulates early neutrophil differentiation

Systemic Lupus Erythematosus - Thromboembolism in pediatric lupus linked to anticoagulant

Amycolatopsis - Cinnamaldehyde derivative inhibits nicotinoprotein alcohol dehydrogenase

T-Cell Function - Venezuelan EEV replicons increase CD56+ T cells with NK-like activity

T-Cell Proliferation - T-cell apoptosis can be induced by cell cycle regulator p21 or peptide DQ 65-79

Thrombosis - FDA approves lab tests for genetic clotting risk

Toxicology - Bisphenol A metabolite levels in urine are gender-dependent

Trypanosoma - Structure of thioredoxin from Trypanosoma brucei brucei determined

Tuberculosis -  M. tuberculosis ethA and inhA gene mutations linked to ethionamide resistance

Tuberculosis Genomics & Genetics -  M. tb strains have differential PE, PE_PGRS gene expression

Tuberculosis Immunology - Novel CD8 cell epitope shared by M. tuberculosis ESAT-6 proteins

Tumor Necrosis Factor - There are several multimeric forms of RANKL involved in osteoclastogenesis

Vaccine Safety -  Vibrio cholerae toxins activate proinflammatory immune response

Bacteriology - Needle length of bacterial injectisomes determined by molecular ruler

Amyloidosis - C-terminal of beta 2-microglobulin plays role in amyloid fibril formation

Vascular Endothelium - Activated lymphocyte, neutrophil migration may be regulated by L-selectin

Vectors and Zoonoses - Single gene encoding VDAC protein identified in Anopheles gambiae

Viral Proteomics - Antivirals are tools for analyzing hepatitis B virus genomic replication

Viral Proteomics - Hemagglutinin uses "leash in the groove" mechanism for membrane fusion

Anesthetics - Protein kinase C plays role in action of volatile anesthetics

Angiology - Elastin induces myofibrillogenesis via VGVAPG domain

Animal Models - Heart and eye disorders in murine MPS IV model identified

Anthrax - Anthrax mounts nuclear attack on glucocorticoid signaling

Anthrax - Calcium may play role in folding pathway of anthrax protective antigen

Anti-Inflammatory - Binding site for anti-inflammatory tripeptide feG identified

Antibiotic Research - Study of E. coli given cecropin B reveals antibiotic's mode of action

Antigen Presentation - Full T-cell expansion, function require days of exposure to antigen complex

Antigen Presentation - Uptake of polioviral RNA creates antigen by neosynthesis, specific CTL result

Gastric Cancer - Cyclooxygenase-2 contributes to gastric carcinogenesis

Antigen-Presenting Cells - APC-expressed indoleamine 2,3-dioxygenase degrades tryptophan; lowers atopy

Antimicrobial Peptides - Cathelicidins vary in resistance to proteolysis; some have sustained activity

Antimicrobials - New classes of antibacterial oxazolidinones reported

Antitumor Therapy - RNA aptamers can bind and inhibit CTLA-4, increasing antitumor activity

Apoptosis - Peptide increases arachidonic acid release and apoptosis of muscle cells

Apoptosis - Targeting lipid raft protein distribution may control apoptosis

Arthritis Pathogenesis - Arthritis-regulating quantitative trait locus on rat chromosome 6

Asthma - Corticosteroids do not appear to prevent early bronchial remodeling

Asthma - Exposure of babies to mite, cat can lead to asthma; repeat rhinitis lowers risk

Autoimmune Disease - Autoreactive B cells infected with EBV may be key to chronic autoimmune disease

Genetic Disorder - Mutations in polyglutamine binding protein 1 gene cause mental retardation

Autoimmune Disease - CNS autoimmune disorders may benefit from the statin anticholesterol drugs

Autoimmune Disease - EEA1 has many B cell epitopes; neurological disease may occur if at C terminal

Bacteriology - Amino acids and peptides may help protein removal and innate lung defense

Bacteriology - Chemical signaling among bacteria and its inhibition reviewed

Bacteriology - DNA-membrane interactions can localize bacterial cell center

Botulinum Toxin - Electrophoresis method to evaluate botulinum toxin activity developed

Brain Tumor - Matrix metalloproteinases are tumor-specific markers in glioma patients

Breast Cancer - Research paves way for individualized treatment

Breast Cancer - Tamoxifen has no effect on p27 protein expression in endometrium

CNS Disease - Extracellular phospholipase A2 inhibitors can inhibit inflammation in CNS

Glioma - P-glycoprotein mediates multidrug resistance in malignant glioma cell lines

Cancer Therapy - Data presented on treatment to combat effects of chemotherapy

Cardiology - Hypoxia-inducible factor 1 regulates several factors to control angiogenesis

Cardiovascular Disease -  MTHFR mutation significantly raises hyperhomocysteinemia risk in children

Cardiovascular Disease - Changes in skeletal muscle gene expression during CHF elucidated

Cardiovascular Disease - Genetic and environmental risk factors for extremely high cholesterol levels identified

Cardiovascular Disease - Losartan may reduce risk of platelet-induced pulmonary thromboembolism

Cardiovascular Disease - Protein kinase C changes RKIP target from Raf-1 to GRK-2

Cardiovascular Disease - Selenium may protect against heart attacks in men

Cardiovascular Disease Therapy - Prevention of SR alterations may underlie beneficial effects of heart failure treatments

Cardiovascular Disease Therapy - Suppression of cardiomyocyte apoptosis has little effect on efficacy of MI treatments

SARS - Researchers assess putative protein targets derived from the SARS genome

Cartilage Repair - Fibrin-chondrocyte constructs can be used to perform cartilage repair

Celiac Disease - Knowledge of gluten-processing path should help celiac disease therapy emerge

Cell Biology - A big surprise: Young nerve cells can rewind their developmental clocks

Cell Biology - Endothelial cell-specific response characterizes VEGF receptor stimulation

Cell Counting - An SAP staining procedure is equal or better than IF for HbF cell counting

Central Nervous System - Ap-1 targets in the brain reviewed

Charcot-Marie-Tooth Syndrome - Late onset Charcot-Marie-Tooth 2 syndrome caused by mutations in MPZ gene

Chemokine Receptors - The E3 ubiquitin ligase AIP4, Hirs, and Vps4 coordinate CXCR4 ubiquitination

Class Switch Recombination - Class switch recombination has unique DNA recognition structures for enzymes

Cocaine Testing - An anti-BZE coated sensor can detect residual cocaine vapor plumes in the air

Addiction Medicine - Amphetamines and cocaine regulate dopamine transporter function

Creutzfeldt-Jakob Disease - In cerebellum of Creutzfeldt-Jakob patients, nestin increases with severity

Crystallography - Complement protein C1q has a trimeric, spherical shape that may aid binding

Cystic Fibrosis - The A561E cystic fibrosis mutation is a class II, protein trafficking defect

Dendritic Cell Function - Cyclosporine may induce tolerogenesis by reducing dendritic cell IL-2, IL-12

Depression - Depression may be linked to proinflammatory cytokine-serotonin interaction

Developmental Biology - New roles for protein modifications in cell migration

Diabetes Pathogenesis - Muscle-specific Pparg deletion causes insulin resistance

Drug Resistance - FLICE inhibitory protein supports chemoresistance in cervical cancer

Embryonic Research - Slit3 protein involved in heart, kidney and diaphragm development

Endocrinology - Ectopic ghrelin expression enhances growth

Allergic Rhinitis - Pranlukast reduces levels of cytokines, eosinophils in rhinitis nasal mucosa

Environmental Exposure - Atrazine contamination in water can be detected with a sensitive immunoassay

Enzymology - Calcineurin anchoring and cell signaling reviewed

Enzymology - Extracellular matrix signals collaborate to govern angiogenesis

Enzymology - Lipoxygenase makes transgenic tobacco less vulnerable to parasitic infection

Escherichia Coli - Latex agglutination, EIA are comparable tests for shiga toxin-E. coli

Food-borne Illness - Major cause of painful gastroenteritis under study at the Medical College of Georgia

Fungal Infection - Mycosis fungoides has changes in T-cell chemokine receptors that depend on stage

Gastric Ulcer - Receptors play role in vascular effects of adrenomedullin in gastric ulcers

Gastroenterology - Glucagon-like peptide-2 is not the only enterotrophin

Gene Expression - Companies renew commitment to gene expression tool

Allergy Medicine - Allergy to goat, sheep milk, but not cow, is due to greater casein homology

Genetic Disorder - Familial Mediterranean fever with amyloidosis linked to mutation of MEFV gene

Genetic Disorder - Kinesin KIF21A mutations linked to congenital fibrosis

Genetic Disorder - PANK2 mutations confirm HARP and Hallervorden-Spatz syndromes are allelic

Genetic Engineering - Reengineered dendritic cells readies cytotoxic T cells for select epitopes

Genital Herpes - Antibodies to HSV-2 glycoprotein G are not always there during primary infection

Genomics and Genetics - Mutations affecting lipoprotein phenotype in South European FH patients identified

Genomics and Genetics - Oxidative DNA damage underlies mitochondrial effects of cancer, HIV drugs

Gynecology - Adenovirus-mediated suicide gene therapy destroys ovarian cancer cells

HIV/AIDS Proteomics - HIV Tat interacts with Notch protein EGF-like repeats and the EGF precursor

HIV/AIDS Proteomics - HIV Vif induces G2 /M arrest in feline and bovine cells

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