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Proteomics Weekly

Susan Hasty, Publisher

Table of Contents . . . December 13th, 2004

Non-Subscriber - Summaries Only

Related Areas: Other Issues in Proteomics Weekly | Other Publications

Cancer Therapy - G-quartet oligonucleotides targeting Stat3 protein fight cancer growth

Development - p38 pathway regulates transcription, translation of Akt during myogenesis

Drug Development - Scaffold-stabilized peptides foster the identification of new drug targets

Hormones - Estrogen controls branched-chain amino acid catabolism in female rats

Phosphorylation - Norepinephrine regulation and diurnal rhythm of protein kinase phosphorylation

Renal Disease - Fatty acid-binding protein in urine denotes proximal tubule stress overload

AIDS/HIV Vaccine - Recall antigen activation induces prompt release of CCR5 ligands from PBMC

AIDS/HIV Vaccine - Seventeen SIV-derived CD8+ T cell Mamu-A*02-restricted epitopes identified

AIDS/HIV Vaccine - Tat protein elicits production of neutralizing antibodies

Adrenergic Receptors - Beta1 -AR can undergo PKA-dependent "Gs /Gi switching"

Adrenergic Receptors - Beta1 AR stimulation activates dual signaling pathways

Allergy Medicine - Fluticasone-mediated airway inflammatory response to organic dust determed

Allergy Medicine - New peanut immunotherapy inhibits allergic response in preclinical studies

Allergy Vaccine - Epitope modulation of Bet v 1 reduces IgE binding but retains protein folding

Alzheimer Disease - A novel presenilin 1 mutation (Y154N) discovered in early onset AD

Alzheimer Disease - Apo and inhibitor complex structures of beta-secretase determined

Alzheimer Disease - Choline acetyltransferase supplementation may slow Alzheimer disease

Alzheimer Disease - Memantine improves spatial learning in an Alzheimer mouse model

Alzheimer Disease - Molecular modeling of the core of beta amyloid fibrils reported

Alzheimer Disease - Semaphorin 3A activity may contribute to hippocampal degeneration

Analgesia - Ketamine potentiates the effect of electroacupuncture on mechanical allodynia

Antibiotics - Scorpion-derived antimicrobial peptide IsCT and its analogs analyzed

Antimicrobials - Antibacterial principle of Caesalpina sappan revealed

Apoptosis - CpG motifs in bacterial DNA delay apoptosis of neutrophil granulocytes

Apoptosis - H2AX phosphorylation at short telomeres in T cells and fibroblasts demonstrated

Apoptosis - Mitochondrial network blocks intraorganellar Ca2+ waves

Arthritis - Gelatinases and septic arthritis of native and replaced knees

Asthma - Abnormal alveolar attachments with decreased elastic fiber seen in fatal asthma

Asthma - Adenosine linked to mucin over-expression in asthma

Asthma - Extracellular matrix regulates human airway smooth muscle cell migration

Atherosclerosis - PLTP deficiency decreases atherosclerosis in mouse models

Atherosclerosis - Role of antibodies to oxidized LDL in atherosclerosis development reviewed

Atherosclerosis - Thiazolidinediones reduce expression of RAGE

Autism - Oxidative stress reported increased in autism

Autoimmune Disease - New protein structure may aid in design of therapeutics

Autoimmune Disease - Therapeutic vaccines in autoimmunity reviewed

Bacteriology -  E. coli genomic cold shock response characterized

Bacteriology - Transcriptional activity of E. coli MelR protein characterized

Bioinformatics - Novel methods map RNA secondary structures in hepatitis C virus genome regions

Biomarkers - The ratio of VEGF-A to its soluble receptor changes in breast cancer patients

Biotechnology - Marine bacteria screened for alpha linolenic acid

Brain Injury - Myoinositol detection studied in children with traumatic brain injury

Breast Cancer - Black tea polyphenols may inhibit hormone-dependent breast tumors

Breast Cancer - Breast tumor expression of EGFR family proteins has prognostic value

Breast Cancer - CTCF not target of 16q22.1 loss in breast carcinoma

Breast Cancer - High geminin expression predicts adverse outcome in breast cancer patients

Breast Cancer - Study finds chemical attraction makes HER2-positive breast cancer invade organs

Business & Finance - DNA-focused pharmaceutical reports on "challenging" quarter

Business Update - EMD Biosciences enters into a cooperative agreement for antibody products

COX-2 Inhibitor - RNA-binding protein CUGBP2/COX-2-mediated PGE2 antagonistic in radiation damage

Calcium Channel - Splice variation furnish reference library for studying CaV 1.2 splice exons

Cancer Research - 'Handcuffing' and unpairing controls of P1 plasmid replication

Cancer Therapy - Down syndrome protein reduces tumor growth

Cancer Therapy - Study may lead to new means of improving existing cancer treatments

Cancer Vaccine - Antibody response improved after antigen-pulsed dendritic cell vaccine

Cancer Vaccine - Unique antigens for therapeutic cancer vaccines reviewed

Cardiac Myofibroblasts - Sp1 may interact with with PKCdelta and MAPK in type I collagen expression

Cardiology - Myosin-binding protein C stabilizes the structure of the thick filament

Cell Biology - A molecular light switch silences neurons

Cell Biology - BAP31 linked to intracellular trafficking of CD11b/CD18 in neutrophils

Cell Biology - Fluorescence reveals ubiquitination dynamics

Cell Biology - Glycocalyx modulates shear-dependent albumin uptake in endothelial cells

Cell Biology - Novel genetic screen used to identify Drosophila S-phase entry regulators

Cell Biology - Stem cells' repair skills might be linked to cancer

Cell Membranes - Report describes the structure of cell membranes

Cellular Signaling - Tissue distribution, calmodulin expression regulation studied in goldfish

Chlamydia - Chlamydia inhibit host-cell apoptosis by degrading proapoptotic proteins

Chronic Obstructive Pulmonary Disease - Chemokines in bronchiolar epithelium play key role in COPD pathogenesis

Cirrhosis - Dietary nucleotides reduce liver damage in cirrhotic rats

Collaborations - Genentech inks agreement for anti-NGF antibody for acute and chronic pain

Colorectal Cancer - Proteomic assay used to determine P450 profile in colorectal tumor metastases

Contraceptive Vaccine - Fusing molecular adjuvant to hCG protein antigen enhances humoral immunity

Creutzfeldt-Jakob Disease - Survival predicted by correlates in sporadic Creutzfeldt-Jakob disease

Critical Care Medicine - Tissue protection from delay phenomenon mediated by heme oxygenase-1

Cystic Fibrosis - Neutrophil peroxidase activity and pulmonary phenotype in cystic fibrosis

Cystic Fibrosis - Transcriptional regulator AlgR controls P. aeruginosa cyanide production

Cytoprotection - Role of glutathione in the adaptive tolerance to hydrogen peroxide

DNA Research - A three step process delineates the handoff of UvrA to UvrB during DNA repair

DNA Research - H-1 paramagnetic relaxation enhancement characterizes protein-DNA interactions

DNA Research - Protein interactions facilitate repair following oxidative DNA damage

Dermatology - The hairless protein regulates epithelial cell differentiation in the skin

Development - Molecular analysis of laminin N-terminal domains mediating self-interactions

Development - Multiple pools of phosphatidylinositol 4-phosphate detected

Development - Synaptic Ras-GTP-ase activating protein regulates spine formation

Diabetes Complications - F2 isoprostane already increased at onset of type 1 diabetes

Diabetes Complications - Inactivation of complement protein involved in diabetes complications

Diabetes Genomics and Genetics - Gene encoding WNT5B linked to type 2 diabetes

Diabetes Genomics and Genetics - Genes protective against type 1 diabetes found on rat chromosome 6q32

Diabetes Genomics and Genetics - Region conserved with diabetes loci identified in human chromosome 1q

Diabetes Pathogenesis - Free insulin-like growth factors reviewed

Diabetes Pathogenesis - Neuronal gluco-sensing in diabetes reviewed

Diabetes Pathogenesis - Vitamin D receptor gene sequence variants in type 1 diabetes analyzed

Diabetes Therapy - INGAP peptide improves nerve function and regeneration in diabetes

Diabetic Neuropathy - PKC-alpha mediates indoleamine content changes in diabetic rat brain

Diagnostics - Use of biomarkers to detect cervical dysplasia, cancer a 'success'

Diet & Nutrition - Gastric ghrelin inhibition by food intake dependent on macronutrients

Disease Associations - Tetraspanin crucial for basement membrane assembly in kidney and skin

Drug Delivery - Biodegradable composite microspheres show promise for protein delivery

Drug Delivery - Protein particle size significantly affects microsphere release rate

Drug Development - Absorptive and secretory quotient values for Pgp substrates determined

Drug Development - Anti-Nogo66 receptor antibody may promote CNS repair

Drug Development - Drug discovery and screening companies announce new collaboration

Drug Development - Novel assay screens anti-SARS drugs

Drug Development - Pharmaceutical company announces new research collaboration

Drug Development - Researchers use crystals to help battle deadly diseases

Drug Discovery - Biotechnology company expands PharmaCarta collaboration with Serono

Drug Metabolism - Cytochrome P450 isoforms involved in ethinylestradiol metabolism identified

Drug Metabolism - Effects of uremic toxins on hepatic processing of erythromycin determined

Drug Metabolism - MDMA is a potent mechanism-based CYP2D6 inhibitor

Endocrinology - Growth hormone treatment raises serum COMP levels in prepubertal children

Endocrinology - Peroxisome proliferator exposure may alter retinoic acid metabolism

Environmental Health - Effects of amitraz on P450 and estrogen activity determined

Environmental Health - Effects of cadmium exposure on male sex hormones characterized

Enzymology - Amphilic interface between enzymes reported

Enzymology - Metalloprotease-2 is involved in human brain neovascularization

Enzymology - Polymorphism in a key folate enzyme influences DNA methylation in young women

Enzymology - Telomerase-transduced cells may treat human diseases

Epilepsy - Electrophysiology of mouse gamma-aminobutryic acid receptors

Epilepsy Therapy - Clobazam metabolism by cytochrome P450 enzymes characterized

Erythropoiesis - Human heme exporter that is essential for erythropoiesis identified

Fibrinogen - AlphaM I-domain and has the potential to recognize numerous sequences

Finance - Cancer/inflammation-focused company reports smaller loss in Q3

Finance - DNA-based diagnostics company reports third quarter results

Finance - RNAi company reports reduced losses in Q3

Food Allergy - BCG vaccine modulates intestinal and systemic response to beta-lactoglobulin

Food Science - Relationship was seen between protein quality and the form ratio of bread loaves

Gene Expression - Hyperthermia-enhanced splenic cytokine gene expression may be mediated by SNS

Gene Expression - Nucleic p68 promotes keratinocyte growth and gene induction in skin wounds

Gene Expression - PKA is necessary in early exercise-induced regulation of Hsp70 gene expression

Gene Research - Newly isolated PP2C epsilon is cDNA widely expresses in human tissues

Gene Vector - Kinase knockdown vectors now include multigenics

Glioma - Glioma ezrin expression has prognostic value

Growth & Development - Increased kidney growth studied in formula-fed versus breast-fed healthy infants

HIV/AIDS Research - RTF prevents bystander T-cell death associated with HIV infection

HIV/AIDS Treatment - European CHMP gives positive opinion on Truvada as part of combo HIV therapy

HIV/AIDS Treatment - Mobius subfamily member kalata B1 exhibits anti-HIV activity

HIV/AIDS Treatment - Study: LEXIVA + RTV may replace AGENERASE + RTV

Hair Studies - Beta-catenin/lef-1 signaling required for DP-induced hair differentiation

Heart Disease - Genetics company announces publication of gene-therapy approach to heart disease

Huntington Disease - Protein interaction network may link GIT1 to Huntington disease

Hypertension - Effect of a gamma-aminobutyric acid-enriched dairy product on blood pressure

Hypertension - Signaling pathway may be key to understanding roots of hypertension

Immunology - CXCR2- and E-selectin-induced neutrophil arrest characterized

Immunology - Chimera of lutropin receptor and chorionic gonadotropin subunit developed

Immunology - E2A target genes in B-cell development identified

Immunology - Eosinophils secrete plasminogen activator inhibitor-2

Immunology - Novel inflammatory chondrocyte secretion products identified

Immunology - Transendothelial basophil migration characterized

Infection - A bacterial virulence pheromone is inactivated by phagocyte-derived oxidants

Infection - Antiviral protein MxA transiently perturbs endocytosis

Infection - CRP used to diagnose infections in infants in developing countries

Infection - Peptidoglycan not associated with sensing of bacteria by toll-like receptor 2

Infection - Protective role nuclear factor-kappa B in pneumococcal meningitis

Infection - Rhinovirus 3C protease precursors localize to the nuclei of infected cells

Infectious Bursal Disease Virus - Particles formed by infectious bursal disease virus protein characterized

Information Technology - Grid software developer selected by IBM to power world community research grid

Leptin Studies - Leptin leads hypothalamic feeding circuits in a new direction

Leptin Studies - Leptin resistance is region-specific in hypothalamus of obese mice

Lipid Studies - Conjugated linoleic acid isomer reduces hepatic triacylglycerol content

Lipid Studies - Niacin noncompetitively inhibits DGAT2 but not DGAT1

Lung Disease - Alveolar macrophages selectively express lysosomal phospholipase A2

Lyme Disease Vaccine - OspA protein of Borrelia burgdorferi vaccination results in neuropathy

Malaria - Homology modeling, mutagenesis analyses of Plasmodium falciparum reported

Malaria Vaccine - Membrane antigen and merozoite protein protect against P. chabaudi malaria

Menstruation - Cyclic variation and distribution of uPA, uPAR, and PAI-1 mRNA studied

Mental Health - Possible role of adrenomedullin in stress hormone secretion in the brain

Metabolism - Regulation, temperature dependence of oxygen binding in globin proteins reported

Molecular Biology - Dual fluorophores assess intramolecular dynamics in large biomolecules

Natural Products - beta-HIVS suppresses TNF receptor-associated protein 1 gene expression

Neural Stem Cell Research - GluR2 predominantly expressed among AMPA receptor subunits in neural SCs

Neural Stem Cell Research - Pleiotrophin signaling systems involved in modulation of fate of neural SCs

Neurodegenerative Diseases - "Movies" allow viewing of protein folding

Neuroimmunology - Minocycline prevents neuronal apoptosis by blocking glial NO release

Neurology - Target innervation by sympathetic axons for nerve growth factor studied

Neurology - VEGF supports nervous system activity as well as angiogenesis

Neuroscience - Delta-opioid receptors in the medial preoptic area regulate lordosis

Neuroscience - Galanin selectively inhibits acetylcholine release in ventral hippocampus

Neuroscience - Synaptic release machinery characterized in Merkel cells

Nosocomial Infection - Prevention of gastrostomy site infections by S. aureus studied

Nutrition - Additive effects of exercise plus omega-3 fatty acids on postprandial lipemia

Nutrition - Multinational study conducted of alpha-lactalbumin concentrations in human milk

Nutrition - Phenylalanine kinetics in formula-fed and human milk-fed preterm infants

Obesity Pathogenesis - 11-Beta-hydroxysteroid dehydrogenase regulates glucocorticoid response

Obesity Pathogenesis - Central administration of ghrelin preferentially enhances fat ingestion

Obesity Pathogenesis - Endocrinological effects of agouti-related protein examined

Obesity Pathogenesis - Hepatic gene expression profiles in obesity mouse model reported

Obstetrics -  Foxa2 expression needed for transition to air breathing in neonates

Obstetrics - Hypoxia doesn't reduce HLA-G expression on extravillous cytotrophoblasts

Oncology - Biotech company announces initiation of Phase II trial for cancer treatment

Oncology - Interleukin-6 may favor tumor-host interactions in uveal melanoma

Oncology - Matrix enzyme inhibitor predicts poor outcomes for esophageal cancer patients

Oncology - Platelet activation shifts the angiogenic balance in cancer patients

Ophthalmology - "Blind" cells see the light; maybe someday humans will, too

Ophthalmology - Insulin-like growth factor-1 plays a role in age-related macular degeneration

Ophthalmology - Somatostatin arrests excess vessel growth in the eyes

Orthopedics - Implants containing fibroblast growth factor stimulate vessel and bone growth

Pain Research - Adenosine inhibits GABAergic, glycinergic transmission studied in rat model

Paraneoplastic Neurologic Disorders - Pyridoxal phosphatase is a novel cancer autoantigen in the central nervous system

Parkinson Disease - Rifampicin shows promise for fighting PD in laboratory tests

Perception - Genetic discovery paves way to decode sense of smell in mammals

Personnel - Biological products provider appoints David Bellitt president of new division

Pharmacology - Pharmacokinetics of novel dipeptide ester prodrugs of acyclovir reported

Physiology - Interstrand loops CD and EF act to regulate fatty acid ligand binding

Physiology - Two interdependent TRPV channel subunits mediate hearing in Drosophila

Physiology - cAMP modulation of release involves different presynaptic mechanisms, proteins

Platelet Activation - Platelet secretion pathway mediated by cGMP-dependent protein kinase

Poxvirus - Poxvirus protein forms a complex with left-handed Z-DNA

Poxvirus - Vaccinia virus kinase induces p53 downregulation by Mdm2-dependent mechanism

Preeclampsia - Cytotrophoblasts generate signals that disturb placental vascular remodeling

Prion Disease - Humoral immune response to prion protein correlates with protection

Prions - Oligomerization of proteolytic products in prions shown

Prostate Cancer - Coding sequence determined for orthologs of prostate cancer susceptibility gene

Protein Mimicry - Synthetic heparin disaccharides show little competition with heparin albumin

Proteomics - Alpha1 -adrenoceptor is responsible for hypertrophy of cardiomyocytes

Proteomics - Beta 1 subunit enhances oxidative regulation of Ca2+-activated K+ channels

Proteomics - Domain of plasma membrane Ca2+-ATPase showed altered conformation

Proteomics - Kinetics of protein adsorption/desorption on microarrays characterized

Proteomics - MTP present in enterocyte brush-border membrane

Proteomics - Microfluidic device facilitates study of protein phase behavior

Proteomics - Online database of murine KIAA gene/protein expression profiles released

Proteomics - Protein dose prevents damage after heart attacks in mouse study

Proteomics - Pseudolarix acid B opposes the anti-apoptotic effects of VEGF

Recurrent Spontaneous Abortion - Deficiency in immunosuppressing circulating factor may play role in RSA

Renal Cancer - CD8+ cytotoxic T lymphocytes recognize renal carcinoma antigens

Reproduction - Specific signals required in EGF-induced human trophoblast migration

Reproductive Biology - Researchers find novel genes regulated by LH in primate corpus luteum

Reproductive Medicine - Androgen receptor gene CAG repeat length may not be related to male infertility

Salmonella Pathogenesis -  Salmonella-induced actin assembly role during infection of host cells elucidated

Schizophrenia - Differential expression of PK, immediate early genes studied in schizophrenia

Schizophrenia Therapy - Clozapine raises acetylcholine and dopamine levels in rat ventral hippocampus

Selenoproteins - Study supports potential use of whole blood for assessing Se statuse

Stem Cell Research - Bryostatin-1 enhances maturation/antigen-presenting ability of dendritic cells

Stem Cell Research - DNA demethylation necessary for epigenetic reprogramming of somatic cell nuclei

Stem Cell Research - ID/OLIG protein interactions mediate BMP4 inhibition on OL differentiation

Stem Cell Research - Research: Cells derived from hESCs can be immortalized by telomerase

Thrombosis - Novel peptide antagonists to thrombin and factor VIIa characterized

Tissue Engineering - Heparin conjugated polylactide may be applied as blood compatible material

Transplant Medicine - Study investigates the mechanisms of organ rejection

Tumor Pathology - Stromal VEGF is a diagnostic biomarker in mammary phyllodes tumors

Vaccine Development - Bacterial heat shock proteins enhance class II MHC antigen processing

Vaccine Development - Gene-gun DNA vaccination intensifies RSV-induced lung pathology in mice

Vaccine Development - Protein to antigen fusion heightens the efficacy of DNA cancer vaccine

Viral Proteomics - RB/E2F activation modulates hepatitis C core protein-induced cell growth

Weight Loss - Peptide YY[3-36] effects on food intake are not affected by ghrelin

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